[xcrysden] problem in Fermi Surface Visualization
محمد ارشد فرحان
arshadfarhan at hotmail.com
Tue Aug 28 05:05:15 CEST 2012
Dear prof. tone,in my old posts (http://www.democritos.it/pipermail/xcrysden/2012-March/001121.html) i had been observing problems with fermi surface visualization.as you suggested i compiled the latest version, which downloaded and installed all the required libraries it self. for the time it worked great. however, it is again having same problem. when i try to visualize FS, it crashes with the following error: *** glibc detected *** /home/mafarhan/programs/xcrysden-1.5.53/bin/xcrys: free(): invalid next size (normal): 0x0000000001cdbae0 ***
======= Backtrace: =========
/lib64/libc.so.6[0x30c787245f]
/lib64/libc.so.6(cfree+0x4b)[0x30c78728bb]
/home/mafarhan/programs/xcrysden-1.5.53/bin/xcrys[0x462bb8]
/home/mafarhan/programs/xcrysden-1.5.53/bin/xcrys[0x47a97d]
/home/mafarhan/programs/xcrysden-1.5.53/bin/xcrys[0x480a33]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(TclInvokeStringCommand+0x6f)[0x2ae3bf02dfbf]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf02f1b9]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf071d70]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(TclObjInterpProcCore+0x11d)[0x2ae3bf0b19ad]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf02f1b9]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf071d70]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(TclObjInterpProcCore+0x11d)[0x2ae3bf0b19ad]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf02f1b9]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(Tcl_EvalObjv+0x43)[0x2ae3bf030393]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(TclEvalObjEx+0x390)[0x2ae3bf0307f0]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf0b2321]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf02f1b9]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf071d70]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(TclObjInterpProcCore+0x11d)[0x2ae3bf0b19ad]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf02f1b9]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf071d70]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(TclObjInterpProcCore+0x11d)[0x2ae3bf0b19ad]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf02f1b9]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(Tcl_EvalObjv+0x43)[0x2ae3bf030393]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(TclEvalObjEx+0x390)[0x2ae3bf0307f0]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf03ac05]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf02f1b9]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf071d70]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(TclObjInterpProcCore+0x11d)[0x2ae3bf0b19ad]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf02f1b9]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf071d70]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(TclObjInterpProcCore+0x11d)[0x2ae3bf0b19ad]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf02f1b9]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(Tcl_EvalObjv+0x43)[0x2ae3bf030393]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(TclEvalObjEx+0x390)[0x2ae3bf0307f0]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf0b2321]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf02f1b9]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf071d70]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(TclObjInterpProcCore+0x11d)[0x2ae3bf0b19ad]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf02f1b9]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf02f2bb]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf071d70]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(TclObjInterpProcCore+0x11d)[0x2ae3bf0b19ad]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so[0x2ae3bf02f1b9]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(Tcl_EvalObjv+0x43)[0x2ae3bf030393]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(TclEvalObjEx+0x390)[0x2ae3bf030/home/mafarhan/programs/xcrysden-1.5.5
3/external/lib/libtk8.5.so(TkBindEventProc+0x178)[0x2ae3bed01048]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtk8.5.so(Tk_HandleEvent+0x3e7)[0x2ae3bed068c7]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtk8.5.so[0x2ae3bed06ce0]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(Tcl_ServiceEvent+0x5d)[0x2ae3bf0a351d]
/home/mafarhan/programs/xcrysden-1.5.53/external/lib/libtcl8.5.so(Tcl_DoOneEvent+0x8e)[0x2ae3bf0a378e]
======= Memory map: ========
00400000-004c9000 r-xp 00000000 08:11 3758224213 /home/mafarhan/programs/xcrysden-1.5.53/bin/xcrys
006c8000-006cc000 rw-p 000c8000 08:11 3758224213 /home/mafarhan/programs/xcrysden-1.5.53/bin/xcrys
006cc000-00735000 rw-p 006cc000 00:00 0
0128e000-02029000 rw-p 0128e000 00:00 0 [heap]
30c7000000-30c701c000 r-xp 00000000 08:01 12747083 /lib64/ld-2.5.so
30c721c000-30c721d000 r--p 0001c000 08:01 12747083 /lib64/ld-2.5.so
30c721d000-30c721e000 rw-p 0001d000 08:01 12747083 /lib64/ld-2.5.so
30c7800000-30c794e000 r-xp 00000000 08:01 12747084 /lib64/libc-2.5.so
30c794e000-30c7b4e000 ---p 0014e000 08:01 12747084 /lib64/libc-2.5.so
30c7b4e000-30c7b52000 r--p 0014e000 08:01 12747084 /lib64/libc-2.5.so
30c7b52000-30c7b53000 rw-p 00152000 08:01 12747084 /lib64/libc-2.5.so
30c7b53000-30c7b58000 rw-p 30c7b53000 00:00 0
30c7c00000-30c7c82000 r-xp 00000000 08:01 12747088 /lib64/libm-2.5.so
30c7c82000-30c7e81000 ---p 00082000 08:01 12747088 /lib64/libm-2.5.so
30c7e81000-30c7e82000 r--p 00081000 08:01 12747088 /lib64/libm-2.5.so
30c7e82000-30c7e83000 rw-p 00082000 08:01 12747088 /lib64/libm-2.5.so
30c8000000-30c8002000 r-xp 00000000 08:01 12747085 /lib64/libdl-2.5.so
30c8002000-30c8202000 ---p 00002000 08:01 12747085 /lib64/libdl-2.5.so
30c8202000-30c8203000 r--p 00002000 08:01 12747085 /lib64/libdl-2.5.so
30c8203000-30c8204000 rw-p 00003000 08:01 12747085 /lib64/libdl-2.5.so
30c8400000-30c8416000 r-xp 00000000 08:01 12747086 /lib64/libpthread-2.5.so
30c8416000-30c8615000 ---p 00016000 08:01 12747086 /lib64/libpthread-2.5.so
30c8615000-30c8616000 r--p 00015000 08:01 12747086 /lib64/libpthread-2.5.so
30c8616000-30c8617000 rw-p 00016000 08:01 12747086 /lib64/libpthread-2.5.so
30c8617000-30c861b000 rw-p 30c8617000 00:00 0
30c8800000-30c8802000 r-xp 00000000 08:01 68776 /usr/lib64/libXau.so.6.0.0
30c8802000-30c8a01000 ---p 00002000 08:01 68776 /usr/lib64/libXau.so.6.0.0
30c8a01000-30c8a02000 rw-p 00001000 08:01 68776 /usr/lib64/libXau.so.6.0.0
30c8c00000-30c8c05000 r-xp 00000000 08:01 69058 /usr/lib64/libXdmcp.so.6.0.0
30c8c05000-30c8e04000 ---p 00005000 08:01 69058 /usr/lib64/libXdmcp.so.6.0.0
30c8e04000-30c8e05000 rw-p 00004000 08:01 69058 /usr/lib64/libXdmcp.so.6.0.0
30c9000000-30c9105000 r-xp 00000000 08:01 69788 /usr/lib64/libX11.so.6.2.0
30c9105000-30c9305000 ---p 00105000 08:01 69788 /usr/lib64/libX11.so.6.2.0
30c9305000-30c930c000 rw-p 00105000 08:01 69788 /usr/lib64/libX11.so.6.2.0
30c9400000-30c9410000 r-xp 00000000 08:01 71084 /usr/lib64/libXext.so.6.4.0
30c9410000-30c9610000 ---p 00010000 08:01 71084 /usr/lib64/libXext.so.6.4.0
30c9610000-30c9611000 rw-p 00010000 08:01 71084 /usr/lib64/libXext.so.6.4.0
30c9800000-30c987f000 r-xp 00000000 08:01 71173 /usr/lib64/lib/home/mafarhan/programs/xcrysden-1.5.53/xcrysden
: line 233: 8887 Aborted ${XCRYSDEN_XCRYS_DIR}/xcrys ${XCRYSDEN_TOPDIR}/Tcl/xcInit.tcl $USE -- $XCRYSDEN_TOPDIR $XCRYS
DEN_SCRATCH "$@" > /dev/null
i had tried with older version of xcrysden also and there it gave a "segmentation fault" as follows: /home/Force/program/XCrySDen-1.5.21-bin-semishared/xcrysden: line 217: 9785 Segmentation fault ${XCRYSDEN_TOPDIR}/bin/xcrys ${XCRYSDEN_TOPDIR}/Tcl/xcInit.tcl $USE -- $XCRYSDEN_TOPDIR $XCRYSDEN_SCRATCH $ARGS > /dev/null
Please help me solve this issue.Regards,Arshad Farhan
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