[xcrysden] xcrysden-1.5.18-cygwin-bin-shared error in X-Window

Sat Apr 21 00:27:18 CEST 2012

Dear Tone,
Thank you very much for your reply!I made what you said. I ran the xcrysden in X-Window. For a few minutes it was possible to see the xcrysden window,but this window dissapeared seconds later and it gave me a new error.This is the new error:
XCRYSDEN_TOPDIR=/home/Juliana/XCrySDen-1.5.18-bin-sharedXCRYSDEN_SCRATCH=/tmp
Running on platform: cygwin      1 [main] wish 4668 child_copy: linked dll data write copy failed, 0x2EE000..0x2F27EC, done 0, windows pid 4740, Win32 error 487  27571 [main] wish8.5 5300 exception::handle: Exception: STATUS_ACCESS_VIOLATION  28082 [main] wish8.5 5300 open_stackdumpfile: Dumping stack trace to wish8.5.exe.stackdumpPackage ImageMagick's convert: /usr/bin/convertPackage ImageMagick's import: /usr/bin/import3402022 [main] wish8.5 3924 exception::handle: Exception: STATUS_ACCESS_VIOLATION3402538 [main] wish8.5 3924 open_stackdumpfile: Dumping stack trace to wish8.5.exe.stackdump3571963 [main] wish 4668 child_copy: linked dll data write copy failed, 0x2EE000..0x2F27EC, done 0, windows pid 4740, Win32 error 487Executing: /home/Juliana/XCrySDen-1.5.18-bin-shared/bin/ftnunit./xcrysden: line 206:  4668 Segmentation fault      (core dumped) exec wish ${XCRYSDEN_TOPDIR}/Tcl/xcInit.tcl $USE -- $XCRYSDEN_TOPDIR $XCRYSDEN_SCRATCH $ARGS > /dev/null
Can you help me again?
Thank you.Regards,
Juliana.

> From: xcrysden-request at democritos.it
> Subject: XCrySDen Digest, Vol 51, Issue 7
> To: xcrysden at democritos.it
> Date: Fri, 20 Apr 2012 09:48:14 +0200
> 
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> Today's Topics:
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>    1. xcrysden-1.5.18-cygwin-bin-shared error in startup script
>       (Juliana .)
>    2. Re: xcrysden-1.5.18-cygwin-bin-shared error in startup script
>       (Tone Kokalj)
>    3. XCRYSDEN or other software? (Elie Albert Moujaes)
> 
> 
> ----------------------------------------------------------------------
> 
> Message: 1
> Date: Thu, 19 Apr 2012 10:11:12 -0300
> From: "Juliana ." <mendesjuliana at hotmail.com>
> Subject: [xcrysden] xcrysden-1.5.18-cygwin-bin-shared error in startup
> 	script
> To: <xcrysden at democritos.it>
> Message-ID: <BLU145-W34100654075E3046BD3CF7AF3D0 at phx.gbl>
> Content-Type: text/plain; charset="iso-8859-1"
> 
> 
> Dear friends,
> I facing some problems to install xcrysden version 1.5.18 in cygwin plataform on Windows 7.Everythings works fine, ./xcConfigure and . ~/.bashrc, but when I call for the program with the command ./xcrysden, it returns me this error:+----------------------------------------------------------------+|****************************************************************||*                                                              *||*  XCrySDen - (X-Window) CRYstalline Structures and DENsities  *||*              =         ===         =              ===        *||*--------------------------------------------------------------*||*                                                              *||*    Anton Kokalj (Tone.Kokalj at ijs.si)                         *||*    Jozef Stefan Institute, Ljubljana, Slovenia               *||*                                                              *||*    Copyright (c) 1996--2004 by Anton Kokalj                  *||*                                                              *||****************************************************************|+----------------------------------------------------------------+
>   Version: 1.5.18
>   Please report bugs to: Tone.Kokalj at ijs.si
> 
>   TERMS OF USE:  -------------  XCRYSDEN is released under the GNU General Public License.
>   Whenever graphics generated by XCRYSDEN are used in scientific  publications, it shall be greatly appreciated to include an explicit  reference. The preferred form is the following:
>   [ref] A. Kokalj, Comp. Mater. Sci., Vol. 28, p. 155, 2003.        Code available from http://www.xcrysden.org/.
> XCRYSDEN_TOPDIR=/home/Juliana/XCrySDen-1.5.18-bin-sharedXCRYSDEN_SCRATCH=/home/Juliana/xcrys_tmp
> Application initialization failed: no display name and no $DISPLAY environment variableError in startup script: no display name and no $DISPLAY environment variable    while executing"load /usr/lib/tk8.5/../../bin/libtk8.5.dll Tk"    ("package ifneeded Tk 8.5.11" script)    invoked from within"load $system(TOPDIR)/bin/xcrys.dll"    invoked from within"if { [file exists $system(TOPDIR)/bin/xcrys.dll] } {    load $system(TOPDIR)/bin/xcrys.dll}"    (file "/home/Juliana/XCrySDen-1.5.18-bin-shared/Tcl/xcInit.tcl" line 426)
> Does anyone knows what is happening?Does anyone knows if the problem is Windows 7 or the cygwin version 2.769?This problem starter after I updated the cygwin to the 2.769 version :(Thanks in advance!Juliana.
>  		 	   		  
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> ------------------------------
> 
> Message: 2
> Date: Thu, 19 Apr 2012 17:51:01 +0200
> From: Tone Kokalj <tone.kokalj at ijs.si>
> Subject: Re: [xcrysden] xcrysden-1.5.18-cygwin-bin-shared error in
> 	startup script
> To: xcrysden at democritos.it
> Message-ID: <1334850661.14030.14.camel at catalyst.ijs.si>
> Content-Type: text/plain; charset="UTF-8"
> 
> On Thu, 2012-04-19 at 10:11 -0300, Juliana . wrote:
> > Dear friends,
> > 
> > 
> > I facing some problems to install xcrysden version 1.5.18 in cygwin
> > plataform on Windows 7.
> > Everythings works fine, ./xcConfigure and . ~/.bashrc, but when I call
> > for the program with the command ./xcrysden, it returns me this error:
> 
> > Application initialization failed: no display name and no $DISPLAY environment variable
> > Error in startup script: no display name and no $DISPLAY environment variable
> 
> Which means you tried to run xcrysden without/outside X-Window.
> First start the X-Window and only then run xcrysden.
> 
> Regards, Tone
> 
> -- 
> Anton Kokalj
> J. Stefan Institute, Jamova 39, 1000 Ljubljana, Slovenia 
> (tel: +386-1-477-3523 // fax:+386-1-477-3822)
> 
> Please, if possible, avoid sending me Word or PowerPoint attachments.
> See:  http://www.gnu.org/philosophy/no-word-attachments.html
> 
> 
> 
> ------------------------------
> 
> Message: 3
> Date: Thu, 19 Apr 2012 23:54:25 -0200
> From: "Elie Albert Moujaes" <emoujaes at fisica.ufmg.br>
> Subject: [xcrysden] XCRYSDEN or other software?
> To: xcrysden at democritos.it
> Message-ID: <20120420014547.M59693 at proto.fisica.ufmg.br>
> Content-Type: text/plain;	charset=iso-8859-1
> 
> 
> Dear all,
> 
> I need your help in something. I am trying to find a software to be used to 
> build polymers (such as PPES) and find their positions (in angstroms, for 
> example), the same as a nanotube modeler would do when one inserts chiralities 
> and carbon bonds where the output would be the positions of the C atoms. I also 
> want to attach the polymer to a SWNT; can XCRYSDEN do that or does anyone have a 
> suggestion of a software for me? I would really be grateful.
> 
> Thank you
> 
> Elie Moujaes
> University of Notts
> NG7 2RD
> UK
> --
> Departamento de Fisica - UFMG/ICEx
> 
> 
> 
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> End of XCrySDen Digest, Vol 51, Issue 7
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